Variant report
| Variant | rs4855468 |
|---|---|
| Chromosome Location | chr3:68454166-68454167 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1039878 | 0.85[AMR][1000 genomes] |
| rs12489559 | 0.90[CEU][hapmap] |
| rs17830081 | 0.96[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17830713 | 0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1912457 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2136715 | 0.89[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4855467 | 0.85[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs4855472 | 0.84[AMR][1000 genomes] |
| rs6549121 | 0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6549122 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6767029 | 0.82[AMR][1000 genomes] |
| rs6767035 | 0.82[AMR][1000 genomes] |
| rs6785673 | 0.85[CEU][hapmap] |
| rs7633799 | 0.82[CEU][hapmap] |
| rs876609 | 0.81[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs876610 | 0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9842711 | 0.81[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9850187 | 0.85[CEU][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834721 | chr3:68365963-68526394 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv998582 | chr3:68422687-68461190 | Enhancers ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv1006007 | chr3:68451209-68474361 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv1001320 | chr3:68451209-68475128 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
