Variant report

Variant	rs6549121
Chromosome Location	chr3:68451311-68451312
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13069007	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.96[YRI][hapmap]
rs13092201	0.91[YRI][hapmap]
rs17830081	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs1912457	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs2136715	0.87[EUR][1000 genomes]
rs262201	0.80[EUR][1000 genomes]
rs4855467	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4855468	0.86[CEU][hapmap]
rs4855469	0.89[CEU][hapmap]
rs6549122	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs7633799	0.96[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap]
rs9822547	0.87[YRI][hapmap]
rs9822557	0.87[YRI][hapmap]
rs9830713	0.81[YRI][hapmap]
rs9833279	0.95[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap]
rs9833308	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998582	chr3:68422687-68461190	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68450600-68453600	Enhancers	Rectal Smooth Muscle	rectum
2	chr3:68451200-68451400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:68451200-68453800	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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