Variant report

Variant	rs9833308
Chromosome Location	chr3:68457521-68457522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10222670	0.83[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13069007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs13092201	0.88[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs17830081	0.83[EUR][1000 genomes]
rs1912457	0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs2136715	0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs4855467	0.83[LWK][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs4855469	0.85[CEU][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs4855477	0.82[TSI][hapmap]
rs6549121	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6549122	0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7633799	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9310080	0.82[TSI][hapmap]
rs9822547	0.81[CEU][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];0.87[YRI][hapmap]
rs9822557	0.81[CEU][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];0.87[YRI][hapmap]
rs9830713	0.81[CEU][hapmap];0.87[YRI][hapmap]
rs9833279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998582	chr3:68422687-68461190	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9833308	FAM19A4	cis	cerebellum	SCAN
rs9833308	SLC25A26	cis	parietal	SCAN
rs9833308	ADRA1A	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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