Variant report

Variant	rs9830713
Chromosome Location	chr3:68459379-68459380
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1039878	0.81[AMR][1000 genomes]
rs12489559	0.87[JPT][hapmap]
rs13092201	0.81[CEU][hapmap];0.95[YRI][hapmap]
rs17830081	0.84[EUR][1000 genomes]
rs17830713	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs1912457	0.84[EUR][1000 genomes]
rs2136715	0.83[EUR][1000 genomes]
rs6549121	0.81[YRI][hapmap];0.84[AFR][1000 genomes]
rs6549122	0.84[EUR][1000 genomes]
rs876609	0.91[EUR][1000 genomes]
rs876610	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs9822547	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9822557	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9833279	0.82[CEU][hapmap];0.81[YRI][hapmap]
rs9833308	0.81[CEU][hapmap];0.87[YRI][hapmap]
rs9842711	0.91[EUR][1000 genomes]
rs9850187	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998582	chr3:68422687-68461190	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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