Variant report

Variant	rs1912457
Chromosome Location	chr3:68451970-68451971
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1039878	0.88[LWK][hapmap]
rs12489559	0.89[CEU][hapmap]
rs13092201	0.87[TSI][hapmap]
rs171893	0.80[LWK][hapmap];0.82[TSI][hapmap]
rs17830081	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17830713	0.93[LWK][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2136715	1.00[ASW][hapmap];0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262180	0.82[TSI][hapmap]
rs262195	0.82[TSI][hapmap]
rs262198	0.80[LWK][hapmap];0.82[TSI][hapmap]
rs4855467	0.85[CEU][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4855468	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4855469	0.89[TSI][hapmap]
rs4855477	0.83[LWK][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap]
rs6549121	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs6549122	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767029	0.83[LWK][hapmap];0.80[MKK][hapmap]
rs6785673	0.85[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs7633799	0.81[CEU][hapmap]
rs876609	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs876610	0.80[ASW][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9310080	0.86[TSI][hapmap]
rs9822547	0.85[TSI][hapmap]
rs9822557	0.85[TSI][hapmap]
rs9833308	0.87[TSI][hapmap]
rs9842711	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9850187	0.85[CEU][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998582	chr3:68422687-68461190	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68450600-68453600	Enhancers	Rectal Smooth Muscle	rectum
2	chr3:68451200-68453800	Enhancers	Colon Smooth Muscle	Colon

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