Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1158994	1.00[CHD][hapmap]
rs12488549	1.00[CHD][hapmap]
rs12489206	1.00[CHD][hapmap]
rs12489559	0.81[CEU][hapmap]
rs1491744	1.00[CHD][hapmap]
rs171893	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17831305	1.00[CHD][hapmap]
rs1912457	0.80[LWK][hapmap];0.82[TSI][hapmap]
rs2136715	0.81[CEU][hapmap];0.81[LWK][hapmap];0.82[TSI][hapmap]
rs262180	0.96[CEU][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs262195	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs262197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs262201	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262204	0.80[TSI][hapmap]
rs262223	0.83[AMR][1000 genomes]
rs262224	0.83[AMR][1000 genomes]
rs262228	0.83[AMR][1000 genomes]
rs262229	0.83[AMR][1000 genomes]
rs262231	0.83[AMR][1000 genomes]
rs262246	0.80[AMR][1000 genomes]
rs262247	1.00[CHD][hapmap];0.80[AMR][1000 genomes]
rs4855463	1.00[CHD][hapmap]
rs6549122	0.81[LWK][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998582	chr3:68422687-68461190	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68423600-68426800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: