Variant report

Variant	rs1158994
Chromosome Location	chr3:68379929-68379930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12488549	1.00[CHD][hapmap]
rs12489206	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs1491744	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs171893	1.00[CHD][hapmap];0.81[MEX][hapmap]
rs17831305	1.00[CHD][hapmap]
rs262178	0.89[CEU][hapmap]
rs262180	1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap]
rs262195	1.00[CHD][hapmap];0.81[MEX][hapmap]
rs262198	1.00[CHD][hapmap]
rs262216	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs262223	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs262224	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs262226	0.81[TSI][hapmap]
rs262227	0.81[TSI][hapmap]
rs262228	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs262229	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs262231	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs262235	0.96[CEU][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs262238	0.81[TSI][hapmap]
rs262241	0.81[TSI][hapmap]
rs262246	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs262247	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4855463	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7634896	0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1010992	chr3:68353191-68388825	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1158994	RYBP	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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