Variant report

Variant	rs262226
Chromosome Location	chr3:68413287-68413288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1158994	0.81[TSI][hapmap]
rs12489206	0.81[TSI][hapmap]
rs1491744	0.81[TSI][hapmap]
rs17047606	0.89[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs17047609	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs17047611	0.89[CHB][hapmap]
rs2221759	0.84[CHB][hapmap];0.82[MEX][hapmap]
rs262186	0.82[CEU][hapmap];0.83[CHB][hapmap];0.87[MEX][hapmap]
rs262190	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs262193	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs262200	0.83[CHB][hapmap]
rs262202	0.82[CEU][hapmap];0.84[CHB][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap]
rs262204	0.89[ASW][hapmap];0.82[CEU][hapmap];0.89[CHB][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap];0.89[AMR][1000 genomes]
rs262206	0.89[CHB][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.85[YRI][hapmap]
rs262216	0.81[TSI][hapmap]
rs262227	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262234	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs262235	0.84[TSI][hapmap]
rs262236	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262237	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262238	0.94[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262239	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262240	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262241	0.94[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs262242	0.96[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs262243	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs262244	0.96[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4855463	0.81[TSI][hapmap]
rs63108	0.94[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6769848	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs6774356	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6776111	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs6792971	0.89[CHB][hapmap];0.87[CHD][hapmap]
rs6805785	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7610318	0.84[CHB][hapmap];0.82[MEX][hapmap]
rs7617495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7629408	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs7639960	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7642781	0.91[MEX][hapmap]
rs952768	0.84[CHB][hapmap];0.82[MEX][hapmap]
rs957895	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590562	chr3:68393781-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv590563	chr3:68402933-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68411600-68413400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:68412400-68413600	Enhancers	Fetal Brain Male	brain

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