Variant report

Variant	rs262206
Chromosome Location	chr3:68419982-68419983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17047606	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs17047609	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs17047611	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap]
rs2221759	0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs262186	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs262190	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs262193	0.96[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs262200	0.94[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs262202	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs262204	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.93[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262226	0.89[CHB][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes]
rs262227	0.89[CHB][hapmap];0.81[GIH][hapmap];0.80[JPT][hapmap];0.96[MEX][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes]
rs262234	0.88[CHB][hapmap];0.85[YRI][hapmap]
rs262236	0.82[AMR][1000 genomes]
rs262237	0.84[CHB][hapmap];0.82[AMR][1000 genomes]
rs262238	0.84[CHB][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes]
rs262239	0.81[AMR][1000 genomes]
rs262240	0.81[AMR][1000 genomes]
rs262241	0.84[CHB][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes]
rs262242	0.84[CHB][hapmap];0.83[AMR][1000 genomes]
rs262243	0.83[AMR][1000 genomes]
rs262244	0.87[CHB][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs63108	0.84[CHB][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes]
rs6769848	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6774356	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs6776111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6805785	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs7610318	0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs7617495	0.89[CHB][hapmap]
rs7629299	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7629408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7639960	0.89[CHB][hapmap]
rs7642781	0.85[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap]
rs952768	0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs957895	0.89[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590562	chr3:68393781-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv590563	chr3:68402933-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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