Variant report

Variant	rs262186
Chromosome Location	chr3:68432325-68432326
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17047606	0.94[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs17047609	0.94[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs17047611	0.94[CHB][hapmap];0.86[CHD][hapmap];0.93[JPT][hapmap]
rs2221759	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap]
rs262190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs262193	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs262200	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs262201	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs262202	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs262204	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs262206	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs262226	0.82[CEU][hapmap];0.83[CHB][hapmap];0.87[MEX][hapmap];0.83[AMR][1000 genomes]
rs262227	0.82[CEU][hapmap];0.83[CHB][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes]
rs262234	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs262238	0.83[MEX][hapmap]
rs262241	0.83[MEX][hapmap]
rs262244	0.80[CHB][hapmap]
rs63108	0.83[MEX][hapmap]
rs6769848	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs6774356	0.83[CHB][hapmap]
rs6776111	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs6805785	0.83[CHB][hapmap]
rs7610318	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap]
rs7617495	0.83[CHB][hapmap]
rs7629299	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7629408	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs7639960	0.83[CHB][hapmap]
rs7642781	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs952768	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap]
rs957895	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998582	chr3:68422687-68461190	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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