Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10222670	0.80[EUR][1000 genomes]
rs17047606	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs17047609	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs17047611	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2221759	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs262186	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs262190	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs262193	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs262201	0.83[AMR][1000 genomes]
rs262202	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs262204	0.83[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs262206	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs262226	0.83[CHB][hapmap]
rs262227	0.83[CHB][hapmap]
rs262234	0.84[CHB][hapmap]
rs262244	0.81[CHB][hapmap]
rs6769848	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs6774356	0.84[CHB][hapmap]
rs6776111	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs6805785	0.85[CHB][hapmap]
rs7610318	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7617495	0.85[CHB][hapmap]
rs7629299	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7629408	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs7639960	0.85[CHB][hapmap]
rs7642781	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs952768	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs957895	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998582	chr3:68422687-68461190	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68423000-68424400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:68423200-68424600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr3:68423400-68424400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:68423600-68424600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:68423600-68426800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: