Variant report

Variant	rs262202
Chromosome Location	chr3:68422687-68422688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17047606	0.95[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap]
rs17047609	0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap]
rs17047611	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs2221759	0.88[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap]
rs262186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs262190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs262193	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs262200	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs262201	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs262204	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs262206	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs262226	0.82[CEU][hapmap];0.84[CHB][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes]
rs262227	0.82[CEU][hapmap];0.84[CHB][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes]
rs262234	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs262238	0.87[GIH][hapmap];0.87[MEX][hapmap]
rs262241	0.87[GIH][hapmap];0.87[MEX][hapmap]
rs262244	0.80[CHB][hapmap]
rs63108	0.87[GIH][hapmap];0.87[MEX][hapmap]
rs6769848	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs6774356	0.83[CHB][hapmap]
rs6776111	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs6805785	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7610318	0.88[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap]
rs7617495	0.84[CHB][hapmap]
rs7629299	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs7629408	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs7639960	0.84[CHB][hapmap]
rs7642781	0.89[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs952768	0.88[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap]
rs957895	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590562	chr3:68393781-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv590563	chr3:68402933-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv998582	chr3:68422687-68461190	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs262202	NFIL3	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links