Variant report

Variant	rs262180
Chromosome Location	chr3:68417939-68417940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1158994	1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap]
rs12488549	1.00[CHD][hapmap]
rs12489206	1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap]
rs1491744	1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap]
rs171893	0.96[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17831305	1.00[CHD][hapmap]
rs1912457	0.82[TSI][hapmap]
rs2136715	0.82[MEX][hapmap];0.82[TSI][hapmap]
rs262195	0.96[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs262197	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs262198	0.96[CEU][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs262201	0.81[EUR][1000 genomes]
rs262204	0.80[TSI][hapmap]
rs262216	1.00[GIH][hapmap];0.91[MEX][hapmap];0.82[YRI][hapmap]
rs262223	0.82[CEU][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs262224	0.82[CEU][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs262228	0.82[CEU][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs262229	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs262231	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs262235	0.94[GIH][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs262246	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs262247	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4855463	1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6549122	0.81[MEX][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590562	chr3:68393781-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv590563	chr3:68402933-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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