Variant report

Variant	rs17831305
Chromosome Location	chr3:68482537-68482538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1158994	1.00[CHD][hapmap]
rs12488549	1.00[CHD][hapmap];0.83[GIH][hapmap];0.88[MEX][hapmap];0.87[AMR][1000 genomes]
rs12489206	1.00[CHD][hapmap]
rs1491744	1.00[CHD][hapmap]
rs1605980	0.89[MEX][hapmap]
rs171893	1.00[CHD][hapmap]
rs262180	1.00[CHD][hapmap]
rs262195	1.00[CHD][hapmap]
rs262198	1.00[CHD][hapmap]
rs262247	1.00[CHD][hapmap]
rs35657439	0.82[EUR][1000 genomes]
rs35940240	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35983779	0.88[AMR][1000 genomes]
rs4855463	1.00[CHD][hapmap]
rs7622452	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7633887	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7653892	0.89[MEX][hapmap]
rs9846667	0.94[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68477800-68487400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68480000-68482800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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