Variant report
| Variant | rs7634896 |
|---|---|
| Chromosome Location | chr3:68354885-68354886 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:68344569..68347557-chr3:68353420..68355980,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs1158994 | 0.82[MEX][hapmap] |
| rs13093684 | 0.96[CEU][hapmap];1.00[CHB][hapmap] |
| rs1491744 | 0.82[MEX][hapmap] |
| rs17232177 | 0.84[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap] |
| rs262216 | 0.82[MEX][hapmap] |
| rs262247 | 0.82[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752014 | chr3:68091879-68416989 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010992 | chr3:68353191-68388825 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
