Variant report

Variant	rs1553823
Chromosome Location	chr3:68510582-68510583
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12485360	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap]
rs13072630	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13076215	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13081659	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs13082036	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs13087359	0.82[YRI][hapmap];0.85[EUR][1000 genomes]
rs13095210	0.83[ASW][hapmap]
rs1397247	0.83[ASW][hapmap];0.92[CEU][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap]
rs1510348	0.81[CEU][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs1588430	0.84[EUR][1000 genomes]
rs1877001	0.83[ASW][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap]
rs2221757	0.92[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34778733	0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs4855477	0.86[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes]
rs907082	0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs9310080	0.86[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes]
rs971231	0.83[ASW][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs9826916	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9832666	0.87[AMR][1000 genomes]
rs9836240	0.83[ASW][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap]
rs9866276	0.83[EUR][1000 genomes]
rs9990177	0.85[AMR][1000 genomes]
rs9990195	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68508400-68520000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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