Variant report

Variant	rs34778733
Chromosome Location	chr3:68522717-68522718
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12485360	0.86[MEX][hapmap];0.85[TSI][hapmap]
rs13076215	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13081659	0.83[TSI][hapmap]
rs13087359	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13095210	0.82[TSI][hapmap]
rs13097849	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1397247	0.85[MEX][hapmap];0.83[TSI][hapmap]
rs1510348	0.85[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs1553823	0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs1588430	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1877000	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1877001	0.88[CEU][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2221757	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2872367	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs35996140	0.83[ASN][1000 genomes]
rs6774723	0.86[CHB][hapmap]
rs6790179	0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs907082	0.88[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs971231	0.83[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9836240	0.92[CEU][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9836335	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9866276	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9990195	0.88[CEU][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68520800-68523200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:68521600-68523000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:68522000-68523000	Enhancers	Colon Smooth Muscle	Colon
4	chr3:68522600-68523000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links