Variant report

Variant	rs13097849
Chromosome Location	chr3:68520499-68520500
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1039971	0.82[CHB][hapmap]
rs1039972	0.84[CHB][hapmap]
rs1039974	1.00[CHB][hapmap]
rs10510970	0.82[CHB][hapmap]
rs1158308	0.84[CHB][hapmap]
rs13060400	1.00[CHB][hapmap]
rs13061250	1.00[CHB][hapmap]
rs13065724	1.00[CHB][hapmap]
rs13068116	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13080569	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13080937	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13082033	1.00[CHB][hapmap]
rs13095473	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13096988	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1355522	1.00[CHB][hapmap]
rs1355525	1.00[CHB][hapmap]
rs1355527	1.00[CHB][hapmap]
rs1398068	1.00[CHB][hapmap]
rs1398070	1.00[CHB][hapmap]
rs1510350	0.91[ASN][1000 genomes]
rs1511889	0.84[CHB][hapmap]
rs1511890	1.00[CHB][hapmap]
rs1511894	1.00[CHB][hapmap]
rs1511895	1.00[CHB][hapmap]
rs1511898	1.00[CHB][hapmap]
rs1511899	1.00[CHB][hapmap]
rs1511900	1.00[CHB][hapmap]
rs1511904	1.00[CHB][hapmap]
rs1511908	1.00[CHB][hapmap]
rs1533155	1.00[CHB][hapmap]
rs1533156	1.00[CHB][hapmap]
rs17047758	0.82[CHB][hapmap]
rs17047811	1.00[CHB][hapmap]
rs17183422	1.00[CHB][hapmap]
rs17242840	0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs17243078	1.00[CHB][hapmap]
rs17243134	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs1849228	1.00[CHB][hapmap]
rs1849229	1.00[CHB][hapmap]
rs1849230	1.00[CHB][hapmap]
rs1849231	1.00[CHB][hapmap]
rs1849232	1.00[CHB][hapmap]
rs1849234	1.00[CHB][hapmap]
rs1849235	1.00[CHB][hapmap]
rs1858375	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1858376	1.00[CHB][hapmap]
rs1877348	1.00[CHB][hapmap]
rs1912851	1.00[CHB][hapmap]
rs1912852	1.00[CHB][hapmap]
rs1912853	1.00[CHB][hapmap]
rs1912854	1.00[CHB][hapmap]
rs2015578	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2137180	1.00[CHB][hapmap]
rs2137181	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2665530	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2665532	1.00[CHB][hapmap]
rs2665536	1.00[CHB][hapmap]
rs2665537	1.00[CHB][hapmap]
rs2665539	1.00[CHB][hapmap]
rs2665540	1.00[CHB][hapmap]
rs2665541	1.00[CHB][hapmap]
rs2665551	1.00[CHB][hapmap]
rs2668156	1.00[CHB][hapmap]
rs2668158	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2668159	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2668162	1.00[CHB][hapmap]
rs2668165	1.00[CHB][hapmap]
rs2668166	1.00[CHB][hapmap]
rs2668170	1.00[CHB][hapmap]
rs2668172	1.00[CHB][hapmap]
rs2872367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs34327552	0.83[EUR][1000 genomes]
rs34778733	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs35996140	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4260447	0.84[CHB][hapmap];0.91[ASN][1000 genomes]
rs4855339	1.00[CHB][hapmap]
rs58726756	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6549128	0.84[CHB][hapmap]
rs6549130	1.00[CHB][hapmap]
rs6774423	1.00[CHB][hapmap]
rs6774723	1.00[CHB][hapmap]
rs7609799	0.82[CHB][hapmap]
rs7612212	0.82[CHB][hapmap];0.87[YRI][hapmap]
rs7619368	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs7653709	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs9310104	1.00[CHB][hapmap]
rs9310105	1.00[CHB][hapmap]
rs9647394	1.00[CHB][hapmap]
rs9810667	1.00[CHB][hapmap]
rs9819205	1.00[CHB][hapmap]
rs983191	1.00[CHB][hapmap]
rs9836279	1.00[CHB][hapmap]
rs9856419	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68520000-68520800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links