Variant report

Variant	rs17242840
Chromosome Location	chr3:68534533-68534534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1039971	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs1039972	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs1039974	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs10510970	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1158308	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs13060400	0.82[CHB][hapmap]
rs13061250	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs13065724	0.95[CEU][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap]
rs13068116	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13080569	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080937	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082033	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs13095473	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096988	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097849	0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs1355522	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs1355525	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs1355527	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs1355528	0.84[AMR][1000 genomes]
rs1398066	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1398068	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs1398070	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs1511889	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs1511890	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs1511893	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1511894	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1511895	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1511896	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1511898	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs1511899	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs1511900	0.95[CEU][hapmap];0.84[JPT][hapmap]
rs1511902	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1511903	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1511904	0.95[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1511908	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs1533155	0.89[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs1533156	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs1606243	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17047758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs17183422	0.95[CEU][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs17243078	0.95[CEU][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap]
rs17243134	0.94[CEU][hapmap]
rs1849228	0.95[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1849229	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1849230	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1849231	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1849232	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1849234	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs1849235	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs1849236	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1858375	0.95[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1858376	0.95[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes]
rs1858377	0.94[CEU][hapmap];0.84[AMR][1000 genomes]
rs1877348	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs1912851	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs1912852	0.95[CEU][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap]
rs1912853	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs1912854	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs1912855	0.84[AMR][1000 genomes]
rs2015578	0.95[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2137180	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs2137181	0.95[CEU][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2665530	0.95[CEU][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2665531	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2665532	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2665533	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2665535	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2665536	0.95[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2665537	0.95[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2665538	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2665539	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs2665540	0.95[CEU][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap]
rs2665541	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs2665551	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs2668156	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs2668158	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs2668159	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs2668161	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2668162	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2668163	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2668165	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2668166	1.00[CEU][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2668167	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2668168	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2668169	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2668170	0.95[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2668172	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs35996140	0.91[EUR][1000 genomes]
rs4260447	0.86[JPT][hapmap]
rs4855339	0.89[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs58726756	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6419764	0.95[CEU][hapmap]
rs6549128	0.95[CEU][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap]
rs6549129	0.95[CEU][hapmap]
rs6549130	0.89[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs6774423	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs6774723	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs7609799	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs7612212	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs7619368	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs7653709	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs9310104	0.95[CEU][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs9310105	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs9647394	0.95[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs9810667	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs9819205	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs983191	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs9836279	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs9856419	0.95[CEU][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68530400-68534600	Enhancers	Fetal Stomach	stomach
2	chr3:68532000-68535000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:68533600-68534600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:68534000-68534600	Enhancers	Fetal Lung	lung

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