Variant report

Variant	rs13068116
Chromosome Location	chr3:68531844-68531845
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs13080569	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13080937	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13095473	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13096988	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13097849	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1355528	0.84[AMR][1000 genomes]
rs1398066	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1511893	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1511894	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1511895	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1511896	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1511902	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1511903	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1511904	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1606243	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17242840	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1849228	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1849229	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1849230	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1849231	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1849232	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1849236	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1858375	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1858376	0.82[AMR][1000 genomes]
rs1858377	0.84[AMR][1000 genomes]
rs1912855	0.84[AMR][1000 genomes]
rs2015578	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2137181	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2665530	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2665531	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2665532	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2665533	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2665535	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2665536	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2665537	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2665538	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2668161	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2668162	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2668163	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2668165	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2668166	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2668167	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2668168	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2668169	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2668170	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35996140	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58726756	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68529800-68532000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:68530400-68534600	Enhancers	Fetal Stomach	stomach
3	chr3:68531400-68533000	Enhancers	Fetal Lung	lung
4	chr3:68531600-68532400	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:68531600-68533000	Enhancers	Colon Smooth Muscle	Colon

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