Variant report

Variant	rs13060400
Chromosome Location	chr3:68583521-68583522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1039971	0.82[CHB][hapmap]
rs1039974	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs10510970	0.82[CHB][hapmap]
rs13061250	0.85[CHB][hapmap]
rs13065724	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs13082033	0.85[CHB][hapmap]
rs13097849	1.00[CHB][hapmap]
rs1355522	0.85[CHB][hapmap]
rs1355525	0.85[CHB][hapmap]
rs1355527	0.85[CHB][hapmap]
rs1398068	0.85[CHB][hapmap]
rs1398070	0.85[CHB][hapmap]
rs1511890	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs1511894	0.85[CHB][hapmap]
rs1511895	0.85[CHB][hapmap]
rs1511898	0.85[CHB][hapmap]
rs1511899	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs1511900	0.85[CHB][hapmap]
rs1511904	0.85[CHB][hapmap]
rs1511908	0.85[CHB][hapmap]
rs1533155	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs1533156	0.85[CHB][hapmap]
rs17047758	0.82[CHB][hapmap]
rs17047811	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17183422	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs17242840	0.82[CHB][hapmap]
rs17243078	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs17243134	0.85[CHB][hapmap]
rs1849228	0.85[CHB][hapmap]
rs1849229	0.85[CHB][hapmap]
rs1849230	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs1849231	0.85[CHB][hapmap]
rs1849232	0.85[CHB][hapmap]
rs1849234	0.85[CHB][hapmap]
rs1849235	0.85[CHB][hapmap]
rs1858375	0.85[CHB][hapmap]
rs1858376	0.85[CHB][hapmap]
rs1877348	0.85[CHB][hapmap]
rs1912851	0.85[CHB][hapmap]
rs1912852	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs1912853	0.85[CHB][hapmap]
rs1912854	0.85[CHB][hapmap]
rs2015578	0.85[CHB][hapmap]
rs2137180	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs2137181	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs2665530	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs2665532	0.85[CHB][hapmap]
rs2665536	0.85[CHB][hapmap]
rs2665537	0.85[CHB][hapmap]
rs2665539	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs2665540	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs2665541	0.85[CHB][hapmap]
rs2665551	0.85[CHB][hapmap]
rs2668156	0.85[CHB][hapmap]
rs2668158	1.00[CHB][hapmap]
rs2668159	0.85[CHB][hapmap]
rs2668162	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs2668165	0.82[CHB][hapmap]
rs2668166	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs2668170	0.84[CHB][hapmap]
rs2668172	0.82[CHB][hapmap]
rs2872367	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs4260447	0.91[CHD][hapmap]
rs4855339	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs6549128	0.90[CHD][hapmap]
rs6549130	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs6774423	0.85[CHB][hapmap]
rs6774723	0.85[CHB][hapmap]
rs7609799	0.82[CHB][hapmap]
rs7612212	0.82[CHB][hapmap]
rs7619368	0.85[CHB][hapmap]
rs7653709	0.82[CHB][hapmap]
rs9310104	0.85[CHB][hapmap];0.81[CHD][hapmap]
rs9310105	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs9647394	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs9810667	0.85[CHB][hapmap]
rs9819205	0.85[CHB][hapmap]
rs983191	0.85[CHB][hapmap]
rs9836279	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13060400	UBA3	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68580400-68585400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:68580400-68585600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:68581400-68585400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:68581600-68590000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:68582200-68584600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:68582400-68584400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:68582400-68585200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:68582600-68584200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:68582600-68584400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:68582600-68585400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:68582800-68585200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:68583000-68585000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:68583200-68584600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:68583400-68584800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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