Variant report

Variant	rs3828784
Chromosome Location	chr6:33772524-33772525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2281817	0.96[ASN][1000 genomes]
rs2281818	0.96[ASN][1000 genomes]
rs3763261	0.96[ASN][1000 genomes]
rs59298999	0.96[ASN][1000 genomes]
rs60110107	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60640960	0.96[ASN][1000 genomes]
rs73412155	0.86[AFR][1000 genomes]
rs73412157	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33757600-33775800	Weak transcription	Right Atrium	heart
2	chr6:33766000-33776000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:33766800-33776400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:33769200-33773200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:33770000-33773000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:33770400-33776000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:33770600-33776200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:33770800-33774400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:33771000-33776200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:33771400-33773200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:33771400-33777000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:33771600-33772800	Enhancers	Fetal Intestine Large	intestine
13	chr6:33771600-33772800	Enhancers	Fetal Intestine Small	intestine
14	chr6:33771600-33774800	Weak transcription	Brain Germinal Matrix	brain
15	chr6:33772000-33772800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:33772200-33772600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:33772200-33775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:33772400-33775800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:33772400-33776200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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