Variant report

Variant	rs3828927
Chromosome Location	chr6:110424341-110424342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:110416916..110418691-chr6:110423265..110425370,2	MCF-7	breast:
2	chr6:110422372..110424640-chr6:110428766..110430402,2	K562	blood:
3	chr6:110423972..110426062-chr6:110431154..110433493,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12201521	0.83[CHD][hapmap];0.91[JPT][hapmap]
rs2334319	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs56122480	0.91[EUR][1000 genomes]
rs7761436	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv2757188	chr6:110389926-110504680	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2759462	chr6:110389926-110504680	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1792799	chr6:110411065-110566597	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110417200-110438600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:110418200-110436000	Weak transcription	Fetal Brain Male	brain
3	chr6:110418400-110425000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:110418800-110429000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:110418800-110437200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:110419000-110424600	Weak transcription	Brain Substantia Nigra	brain
7	chr6:110419000-110426600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:110419000-110427400	Weak transcription	Fetal Lung	lung
9	chr6:110419000-110428000	Weak transcription	HSMM	muscle
10	chr6:110419000-110431800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:110419000-110449600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:110419000-110461800	Weak transcription	HSMMtube	muscle
13	chr6:110419200-110449600	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:110419400-110430800	Weak transcription	Osteobl	bone
15	chr6:110419800-110429800	Strong transcription	Stomach Smooth Muscle	stomach
16	chr6:110419800-110436400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:110420000-110424400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:110420000-110430000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:110420200-110425200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:110420200-110427000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:110420400-110424400	Weak transcription	Spleen	Spleen
22	chr6:110420400-110431200	Weak transcription	Fetal Heart	heart
23	chr6:110420600-110424800	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:110420600-110426400	Weak transcription	Left Ventricle	heart
25	chr6:110420600-110435200	Weak transcription	Brain Anterior Caudate	brain
26	chr6:110421200-110424800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:110421200-110430200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:110421200-110433400	Weak transcription	K562	blood
29	chr6:110421400-110430000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:110421600-110424800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:110421600-110425400	Strong transcription	Liver	Liver
32	chr6:110421800-110424400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:110421800-110424800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:110422000-110424600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:110422200-110424800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:110422400-110424800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:110422400-110426200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:110422600-110425400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:110422800-110425000	Strong transcription	HUVEC	blood vessel
40	chr6:110422800-110428200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:110423000-110426400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:110423200-110424400	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:110423200-110424400	Weak transcription	Fetal Kidney	kidney
44	chr6:110423200-110424800	Weak transcription	Fetal Intestine Large	intestine
45	chr6:110423200-110424800	Genic enhancers	NHEK	skin
46	chr6:110423200-110427400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:110423200-110427400	Weak transcription	Gastric	stomach
48	chr6:110423200-110429600	Weak transcription	NH-A	brain
49	chr6:110423200-110440800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:110423200-110448400	Weak transcription	Muscle Satellite Cultured Cells	--

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