Variant report

Variant	rs7761436
Chromosome Location	chr6:110502831-110502832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr6:110502557-110503182	GM12878	blood:	n/a	chr6:110502959-110502970
2	USF2	chr6:110502654-110503112	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110499653..110501302-chr6:110501539..110503482,2	MCF-7	breast:
2	chr6:110501609..110503511-chr6:110521177..110523948,2	MCF-7	breast:

Variant related genes	Relation type
WASF1	TF binding region
ENSG00000168438	Chromatin interaction
ENSG00000112290	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12201521	0.91[JPT][hapmap]
rs2334319	0.91[JPT][hapmap]
rs3828927	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs56122480	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv2757188	chr6:110389926-110504680	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2759462	chr6:110389926-110504680	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1792799	chr6:110411065-110566597	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv886536	chr6:110426046-110502831	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110499400-110503000	Active TSS	H1 Cell Line	embryonic stem cell
2	chr6:110499400-110503000	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:110499400-110503200	Active TSS	K562	blood
4	chr6:110499600-110503000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:110499600-110503000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:110499600-110503800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:110501600-110503200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr6:110501600-110503400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:110501800-110503200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr6:110501800-110503200	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr6:110501800-110503400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr6:110501800-110503600	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr6:110502000-110503000	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr6:110502000-110503000	Flanking Active TSS	HUVEC	blood vessel
15	chr6:110502000-110503200	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr6:110502000-110503400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
17	chr6:110502000-110503400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
18	chr6:110502000-110503400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:110502000-110503400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
20	chr6:110502000-110503600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:110502000-110503800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr6:110502000-110503800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:110502000-110504600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr6:110502200-110503000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr6:110502200-110503000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:110502200-110503000	Flanking Active TSS	Brain Germinal Matrix	brain
27	chr6:110502200-110503000	Flanking Active TSS	Brain Substantia Nigra	brain
28	chr6:110502200-110503000	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr6:110502200-110503000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr6:110502200-110503200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
31	chr6:110502200-110503200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:110502200-110503200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:110502200-110503200	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr6:110502200-110503200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr6:110502200-110503200	Flanking Active TSS	Rectal Smooth Muscle	rectum
36	chr6:110502200-110503200	Flanking Active TSS	HMEC	breast
37	chr6:110502200-110503200	Flanking Active TSS	NHEK	skin
38	chr6:110502200-110503200	Flanking Active TSS	Osteobl	bone
39	chr6:110502200-110503400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:110502200-110503400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:110502200-110503400	Flanking Active TSS	Primary B cells from peripheral blood	blood
42	chr6:110502200-110503400	Flanking Active TSS	Liver	Liver
43	chr6:110502200-110503400	Flanking Active TSS	Fetal Lung	lung
44	chr6:110502200-110503400	Flanking Active TSS	Hela-S3	cervix
45	chr6:110502200-110503600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:110502200-110503600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr6:110502200-110503600	Flanking Active TSS	Brain Angular Gyrus	brain
48	chr6:110502200-110503600	Flanking Active TSS	Fetal Brain Female	brain
49	chr6:110502200-110503600	Enhancers	Placenta Amnion	Placenta Amnion
50	chr6:110502200-110503600	Enhancers	Spleen	Spleen

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