Variant report

Variant	rs3845559
Chromosome Location	chr1:192849438-192849439
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56831148	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57235619	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59218459	1.00[AMR][1000 genomes]
rs59770127	0.85[AMR][1000 genomes]
rs59822199	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6677263	0.85[AMR][1000 genomes]
rs7522104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192841800-192850200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:192843800-192861800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:192845800-192849600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:192846400-192850000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:192847400-192849600	Enhancers	Aorta	Aorta
6	chr1:192847800-192850400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:192848000-192852400	Weak transcription	Pancreas	Pancrea
8	chr1:192848400-192853600	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:192849400-192849600	Enhancers	Fetal Lung	lung
10	chr1:192849400-192849600	Enhancers	Fetal Stomach	stomach
11	chr1:192849400-192850000	Enhancers	Primary B cells from cord blood	blood
12	chr1:192849400-192850200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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