Variant report

Variant	rs56831148
Chromosome Location	chr1:192833864-192833865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3845559	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57235619	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59218459	1.00[AMR][1000 genomes]
rs59770127	0.85[AMR][1000 genomes]
rs59822199	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60733376	0.81[AFR][1000 genomes]
rs6677263	0.85[AMR][1000 genomes]
rs7522104	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192830200-192845800	Weak transcription	Pancreas	Pancrea
2	chr1:192830400-192835200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:192830400-192835400	Weak transcription	Small Intestine	intestine
4	chr1:192833200-192834000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links