Variant report

Variant	rs60733376
Chromosome Location	chr1:192838539-192838540
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2057043	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56831148	0.81[AFR][1000 genomes]
rs6428138	0.89[AMR][1000 genomes]
rs6661721	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6662006	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73064109	0.89[AMR][1000 genomes]
rs7534357	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192830200-192845800	Weak transcription	Pancreas	Pancrea
2	chr1:192837600-192839400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:192837800-192838600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr1:192838000-192839000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr1:192838000-192839400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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