Variant report

Variant	rs3846317
Chromosome Location	chr4:149165351-149165352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10011581	0.96[ASN][1000 genomes]
rs10026226	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11932031	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11945778	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17581311	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2163172	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28372032	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3846319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857083	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6535596	0.83[EUR][1000 genomes]
rs6535597	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6812904	0.85[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6832393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6833414	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9997090	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149140000-149170800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr4:149156400-149172600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:149160600-149166400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:149160800-149179800	Weak transcription	Psoas Muscle	Psoas
5	chr4:149161000-149166600	Weak transcription	Fetal Heart	heart
6	chr4:149161200-149172000	Weak transcription	Right Atrium	heart
7	chr4:149162200-149166000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:149164200-149165800	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr4:149164400-149167000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr4:149165000-149166600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr4:149165200-149165400	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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