Variant report

Variant	rs6535596
Chromosome Location	chr4:149194771-149194772
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10011581	0.85[EUR][1000 genomes]
rs10026226	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11932031	0.89[EUR][1000 genomes]
rs2163172	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28372032	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3846317	0.83[EUR][1000 genomes]
rs3846319	0.83[EUR][1000 genomes]
rs3857083	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6535597	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6812904	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6832393	0.83[EUR][1000 genomes]
rs6833414	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149177200-149194800	Weak transcription	Small Intestine	intestine
3	chr4:149181200-149194800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:149182600-149194800	Weak transcription	Esophagus	oesophagus
5	chr4:149183000-149194800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:149186000-149194800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:149186200-149194800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:149187400-149194800	Weak transcription	Brain Angular Gyrus	brain
9	chr4:149187800-149194800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:149188000-149194800	Weak transcription	Lung	lung
11	chr4:149188600-149194800	Weak transcription	Pancreas	Pancrea
12	chr4:149188600-149194800	Weak transcription	Right Atrium	heart
13	chr4:149190400-149194800	Weak transcription	Brain Substantia Nigra	brain
14	chr4:149190600-149194800	Weak transcription	Brain Anterior Caudate	brain
15	chr4:149192200-149194800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:149192400-149209400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:149193000-149194800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:149193200-149194800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:149193800-149196800	Enhancers	Fetal Heart	heart
20	chr4:149194000-149195200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr4:149194200-149194800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:149194200-149198000	Enhancers	Fetal Intestine Small	intestine
23	chr4:149194400-149195200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr4:149194400-149195400	Enhancers	Colon Smooth Muscle	Colon
25	chr4:149194400-149195600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:149194600-149194800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:149194600-149194800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:149194600-149194800	Enhancers	Liver	Liver
30	chr4:149194600-149195200	Enhancers	Ovary	ovary
31	chr4:149194600-149196800	Enhancers	Left Ventricle	heart
32	chr4:149194600-149198000	Enhancers	Fetal Intestine Large	intestine

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