Variant report

Variant	rs3846798
Chromosome Location	chr6:65229064-65229065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28445464	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55683901	1.00[AMR][1000 genomes]
rs55970733	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56177406	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56387345	0.89[AFR][1000 genomes]
rs59685849	1.00[AMR][1000 genomes]
rs59962897	1.00[EUR][1000 genomes]
rs61646309	1.00[AMR][1000 genomes]
rs73764421	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73764802	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73767537	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73767804	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7763168	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1015718	chr6:64821273-65479726	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1018075	chr6:65185962-65234866	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1021566	chr6:65186049-65229208	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv969482	chr6:65227435-65230587	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65228000-65229400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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