Variant report

Variant	rs59962897
Chromosome Location	chr6:65122564-65122565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHF3-2	chr6:65122529-65122672	ENSG00000232120.1

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28445464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3846798	1.00[EUR][1000 genomes]
rs55970733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56177406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56387345	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941680	1.00[EUR][1000 genomes]
rs73763355	1.00[EUR][1000 genomes]
rs73764421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73764802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73766031	1.00[EUR][1000 genomes]
rs73766032	1.00[EUR][1000 genomes]
rs73766036	1.00[EUR][1000 genomes]
rs73766038	1.00[EUR][1000 genomes]
rs73766043	1.00[EUR][1000 genomes]
rs73766066	1.00[EUR][1000 genomes]
rs73767537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73767804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757774	1.00[EUR][1000 genomes]
rs7763168	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9784866	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1015718	chr6:64821273-65479726	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv885999	chr6:64946169-65227097	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv462970	chr6:64971436-65198215	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv603391	chr6:64971436-65198215	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830675	chr6:65034132-65223344	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1828437	chr6:65098768-65155219	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65121800-65124200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:65121800-65125000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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