Variant report

Variant	rs3846833
Chromosome Location	chr6:24462367-24462368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24450784..24454394-chr6:24459260..24463305,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10946700	0.81[ASN][1000 genomes]
rs10946701	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194966	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12198188	0.81[ASN][1000 genomes]
rs12524609	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205577	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13205780	0.81[ASN][1000 genomes]
rs17247566	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60830931	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400468	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922313	0.81[ASN][1000 genomes]
rs6922631	0.81[ASN][1000 genomes]
rs71544274	0.81[ASN][1000 genomes]
rs7762593	0.81[ASN][1000 genomes]
rs7762901	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7766620	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295624	0.81[ASN][1000 genomes]
rs9461010	0.81[ASN][1000 genomes]
rs9461011	0.81[ASN][1000 genomes]
rs9461012	0.81[ASN][1000 genomes]
rs9461014	0.81[ASN][1000 genomes]
rs9461015	0.81[ASN][1000 genomes]
rs9467148	0.81[ASN][1000 genomes]
rs9467157	0.81[ASN][1000 genomes]
rs9467158	0.81[ASN][1000 genomes]
rs9467160	0.81[ASN][1000 genomes]
rs9467161	0.81[ASN][1000 genomes]
rs9467166	0.81[ASN][1000 genomes]
rs9467168	0.81[ASN][1000 genomes]
rs9467170	0.94[ASN][1000 genomes]
rs9467171	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467172	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv2763542	chr6:24445131-24520637	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv519552	chr6:24451256-24524704	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv515988	chr6:24454679-24463461	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3846833	MRS2L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24427800-24467000	Weak transcription	Brain Germinal Matrix	brain
2	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:24429400-24483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:24432600-24463800	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24438000-24464000	Weak transcription	Pancreas	Pancrea
6	chr6:24438400-24483200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:24438800-24469200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:24447200-24470200	Weak transcription	Aorta	Aorta
9	chr6:24447400-24490400	Weak transcription	Brain Anterior Caudate	brain
10	chr6:24448200-24466200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:24448800-24488000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:24452600-24466400	Weak transcription	Dnd41	blood
13	chr6:24453200-24471000	Strong transcription	Liver	Liver
14	chr6:24458600-24489000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:24458800-24492800	Weak transcription	Thymus	Thymus
16	chr6:24458800-24494000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:24461600-24464000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:24461800-24464000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:24462200-24462600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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