Variant report

Variant	rs10946700
Chromosome Location	chr6:24442158-24442159
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10946701	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12194966	1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198188	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524609	0.81[ASN][1000 genomes]
rs13191455	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs13192752	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13205577	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205780	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17247566	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34089102	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35901848	0.88[ASN][1000 genomes]
rs3846833	0.81[ASN][1000 genomes]
rs60830931	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62400468	0.81[ASN][1000 genomes]
rs6922313	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922631	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71544274	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762593	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7762901	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766620	0.81[ASN][1000 genomes]
rs9295624	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461011	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461012	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461013	0.88[ASN][1000 genomes]
rs9461014	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9461015	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9467148	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467157	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467158	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467160	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467161	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467166	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467168	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9467170	0.88[ASN][1000 genomes]
rs9467171	0.81[ASN][1000 genomes]
rs9467172	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10946700	MRS2L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24417400-24451800	Strong transcription	Liver	Liver
2	chr6:24421200-24448800	Weak transcription	Gastric	stomach
3	chr6:24421200-24459600	Weak transcription	Spleen	Spleen
4	chr6:24424000-24456600	Weak transcription	Ovary	ovary
5	chr6:24424400-24445800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:24426200-24446000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:24426400-24446000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:24427600-24445600	Weak transcription	Fetal Brain Female	brain
9	chr6:24427600-24456800	Weak transcription	Lung	lung
10	chr6:24427800-24467000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:24428200-24449400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:24428800-24445000	Weak transcription	Psoas Muscle	Psoas
13	chr6:24429000-24447800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:24429200-24455600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:24429400-24445000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:24429400-24483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:24429600-24444800	Weak transcription	HepG2	liver
19	chr6:24429600-24455000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:24430800-24448400	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:24432600-24463800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:24433600-24451600	Weak transcription	Adipose Nuclei	Adipose
23	chr6:24437600-24455400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:24437800-24450600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:24437800-24459600	Weak transcription	Left Ventricle	heart
26	chr6:24438000-24464000	Weak transcription	Pancreas	Pancrea
27	chr6:24438200-24445400	Weak transcription	Aorta	Aorta
28	chr6:24438200-24447800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:24438200-24455600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:24438400-24445600	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:24438400-24448600	Weak transcription	Right Ventricle	heart
32	chr6:24438400-24483200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:24438600-24459800	Weak transcription	Fetal Stomach	stomach
34	chr6:24438800-24469200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:24440400-24452000	Weak transcription	Primary T cells from cord blood	blood
36	chr6:24440600-24445400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:24441200-24442600	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr6:24441400-24452000	Weak transcription	Thymus	Thymus
39	chr6:24442000-24443600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:24442000-24443800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:24442000-24448000	Weak transcription	K562	blood
42	chr6:24442000-24452000	Weak transcription	Fetal Thymus	thymus

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