Variant report

Variant	rs13192752
Chromosome Location	chr6:24445369-24445370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24444100..24446602-chr6:24457686..24459822,2	K562	blood:
2	chr6:24438222..24440221-chr6:24443252..24446225,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10946700	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10946701	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12194966	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12198188	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12524609	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13191455	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13205577	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13205780	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17247566	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34089102	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35901848	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60830931	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6922313	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6922631	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71544274	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7762593	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7762901	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766620	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs793712	0.91[EUR][1000 genomes]
rs793717	0.93[EUR][1000 genomes]
rs9295624	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9461010	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9461011	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9461012	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9461013	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461014	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9461015	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9467148	0.88[ASN][1000 genomes]
rs9467157	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467158	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467160	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467161	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467166	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467168	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9467170	0.80[AMR][1000 genomes]
rs9467171	0.89[AMR][1000 genomes]
rs9467172	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv2763542	chr6:24445131-24520637	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13192752	MRS2L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24417400-24451800	Strong transcription	Liver	Liver
2	chr6:24421200-24448800	Weak transcription	Gastric	stomach
3	chr6:24421200-24459600	Weak transcription	Spleen	Spleen
4	chr6:24424000-24456600	Weak transcription	Ovary	ovary
5	chr6:24424400-24445800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:24426200-24446000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:24426400-24446000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:24427600-24445600	Weak transcription	Fetal Brain Female	brain
9	chr6:24427600-24456800	Weak transcription	Lung	lung
10	chr6:24427800-24467000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:24428200-24449400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:24429000-24447800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
14	chr6:24429200-24455600	Weak transcription	Brain Angular Gyrus	brain
15	chr6:24429400-24483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:24429600-24455000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:24430800-24448400	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:24432600-24463800	Weak transcription	Fetal Intestine Small	intestine
19	chr6:24433600-24451600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:24437600-24455400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:24437800-24450600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:24437800-24459600	Weak transcription	Left Ventricle	heart
23	chr6:24438000-24464000	Weak transcription	Pancreas	Pancrea
24	chr6:24438200-24445400	Weak transcription	Aorta	Aorta
25	chr6:24438200-24447800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:24438200-24455600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:24438400-24445600	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:24438400-24448600	Weak transcription	Right Ventricle	heart
29	chr6:24438400-24483200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:24438600-24459800	Weak transcription	Fetal Stomach	stomach
31	chr6:24438800-24469200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:24440400-24452000	Weak transcription	Primary T cells from cord blood	blood
33	chr6:24440600-24445400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:24441400-24452000	Weak transcription	Thymus	Thymus
35	chr6:24442000-24448000	Weak transcription	K562	blood
36	chr6:24442000-24452000	Weak transcription	Fetal Thymus	thymus
37	chr6:24444000-24449200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:24444000-24458200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:24444200-24446000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:24445000-24445600	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr6:24445000-24447400	Strong transcription	Brain Anterior Caudate	brain

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