Variant report

Variant	rs793712
Chromosome Location	chr6:24446882-24446883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12198188	0.81[EUR][1000 genomes]
rs13192752	0.91[EUR][1000 genomes]
rs13205577	0.84[EUR][1000 genomes]
rs34089102	0.92[EUR][1000 genomes]
rs71544274	0.81[EUR][1000 genomes]
rs7762901	0.84[EUR][1000 genomes]
rs793717	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295624	0.81[EUR][1000 genomes]
rs9461011	0.81[EUR][1000 genomes]
rs9461012	0.81[EUR][1000 genomes]
rs9467158	0.81[EUR][1000 genomes]
rs9467166	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv2763542	chr6:24445131-24520637	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv820266	chr6:24445877-24447244	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs793712	MRS2L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24417400-24451800	Strong transcription	Liver	Liver
2	chr6:24421200-24448800	Weak transcription	Gastric	stomach
3	chr6:24421200-24459600	Weak transcription	Spleen	Spleen
4	chr6:24424000-24456600	Weak transcription	Ovary	ovary
5	chr6:24427600-24456800	Weak transcription	Lung	lung
6	chr6:24427800-24467000	Weak transcription	Brain Germinal Matrix	brain
7	chr6:24428200-24449400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:24429000-24447800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
10	chr6:24429200-24455600	Weak transcription	Brain Angular Gyrus	brain
11	chr6:24429400-24483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:24429600-24455000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:24430800-24448400	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:24432600-24463800	Weak transcription	Fetal Intestine Small	intestine
15	chr6:24433600-24451600	Weak transcription	Adipose Nuclei	Adipose
16	chr6:24437600-24455400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:24437800-24450600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:24437800-24459600	Weak transcription	Left Ventricle	heart
19	chr6:24438000-24464000	Weak transcription	Pancreas	Pancrea
20	chr6:24438200-24447800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:24438200-24455600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:24438400-24448600	Weak transcription	Right Ventricle	heart
23	chr6:24438400-24483200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:24438600-24459800	Weak transcription	Fetal Stomach	stomach
25	chr6:24438800-24469200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:24440400-24452000	Weak transcription	Primary T cells from cord blood	blood
27	chr6:24441400-24452000	Weak transcription	Thymus	Thymus
28	chr6:24442000-24448000	Weak transcription	K562	blood
29	chr6:24442000-24452000	Weak transcription	Fetal Thymus	thymus
30	chr6:24444000-24449200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:24444000-24458200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:24445000-24447400	Strong transcription	Brain Anterior Caudate	brain
33	chr6:24445400-24447200	Strong transcription	Aorta	Aorta
34	chr6:24445400-24448400	Strong transcription	Stomach Smooth Muscle	stomach
35	chr6:24445600-24448800	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:24446000-24449200	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr6:24446400-24448600	Weak transcription	Fetal Brain Female	brain
38	chr6:24446400-24449400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:24446400-24451600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:24446400-24451800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:24446600-24448200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:24446800-24448800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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