Variant report

Variant	rs3849543
Chromosome Location	chr3:21662267-21662268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21647238..21649840-chr3:21661152..21662848,2	MCF-7	breast:
2	chr3:21661677..21663876-chr3:21672087..21673595,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11129012	1.00[ASW][hapmap];0.82[CHB][hapmap]
rs12492021	0.88[EUR][1000 genomes]
rs1532129	0.93[GIH][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs17029420	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1003451	chr3:21623631-21662267	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876612	chr3:21641957-21673600	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21646200-21669000	Weak transcription	Fetal Lung	lung
2	chr3:21651600-21686600	Weak transcription	Fetal Stomach	stomach
3	chr3:21655800-21662400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:21662000-21662400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:21662000-21662400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:21662000-21662600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:21662000-21662800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:21662000-21662800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:21662000-21663000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:21662000-21663000	Active TSS	Duodenum Mucosa	Duodenum
11	chr3:21662000-21663200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:21662000-21663200	Enhancers	Aorta	Aorta
13	chr3:21662000-21663200	Enhancers	NH-A	brain
14	chr3:21662000-21663400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:21662000-21663400	Bivalent Enhancer	Fetal Brain Male	brain
16	chr3:21662000-21663400	Enhancers	HepG2	liver
17	chr3:21662200-21662400	Enhancers	Fetal Muscle Leg	muscle
18	chr3:21662200-21662600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr3:21662200-21662600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr3:21662200-21662600	Flanking Active TSS	Fetal Intestine Small	intestine
21	chr3:21662200-21662600	Flanking Active TSS	Fetal Kidney	kidney
22	chr3:21662200-21662600	Enhancers	Gastric	stomach
23	chr3:21662200-21662600	Enhancers	Left Ventricle	heart
24	chr3:21662200-21662600	Flanking Active TSS	Stomach Mucosa	stomach
25	chr3:21662200-21662600	Enhancers	Hela-S3	cervix
26	chr3:21662200-21662800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:21662200-21663000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:21662200-21663000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr3:21662200-21663000	Enhancers	NHDF-Ad	bronchial
30	chr3:21662200-21663200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr3:21662200-21663200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:21662200-21663200	Enhancers	Adipose Nuclei	Adipose
33	chr3:21662200-21666000	Weak transcription	Psoas Muscle	Psoas

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