Variant report

Variant	rs3850311
Chromosome Location	chr14:63511348-63511349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1950986	0.83[CHB][hapmap]
rs1956674	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63510400-63513000	Bivalent/Poised TSS	Fetal Brain Female	brain
2	chr14:63510600-63513800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr14:63511000-63511600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:63511000-63511600	Flanking Active TSS	Hela-S3	cervix
5	chr14:63511000-63513000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:63511000-63513800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr14:63511200-63511400	Flanking Bivalent TSS/Enh	NHLF	lung
8	chr14:63511200-63511600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr14:63511200-63511600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
10	chr14:63511200-63511600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:63511200-63511800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
12	chr14:63511200-63512200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
13	chr14:63511200-63513000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
14	chr14:63511200-63513200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:63511200-63513200	Active TSS	Brain Angular Gyrus	brain
16	chr14:63511200-63513400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:63511200-63513400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr14:63511200-63513600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:63511200-63513800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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