Variant report

Variant	rs1956674
Chromosome Location	chr14:63504282-63504283
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11158469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1950987	0.80[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1956673	0.81[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1956675	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3850311	0.81[CEU][hapmap]
rs3850312	0.84[JPT][hapmap]
rs3910327	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs3915801	0.84[JPT][hapmap]
rs4127780	0.84[JPT][hapmap]
rs4609762	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6573476	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs7154634	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs7156008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs717059	0.85[CHB][hapmap];0.85[JPT][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs8021914	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63499800-63507000	Weak transcription	Hela-S3	cervix
2	chr14:63503000-63511000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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