Variant report

Variant	rs3915801
Chromosome Location	chr14:63526898-63526899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10132722	0.86[ASN][1000 genomes]
rs10132985	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10134176	0.94[ASW][hapmap];0.89[YRI][hapmap]
rs10136314	0.85[YRI][hapmap]
rs10147103	0.89[YRI][hapmap]
rs10162413	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10483763	0.96[CEU][hapmap]
rs10873166	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1111450	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1111452	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158469	0.81[JPT][hapmap]
rs11158471	0.83[ASW][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.87[MEX][hapmap]
rs11158472	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1950983	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs1950985	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs1956670	0.83[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs1956674	0.84[JPT][hapmap]
rs2146940	0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs2356101	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs3850312	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap]
rs3861503	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4127778	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4127780	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4483779	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs4584750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4902201	1.00[CEU][hapmap]
rs6573480	0.94[ASW][hapmap];0.83[YRI][hapmap]
rs7141839	1.00[ASW][hapmap];0.86[LWK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs7156008	0.89[JPT][hapmap]
rs8015817	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs8017368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs8018618	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8019140	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap]
rs8020935	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs941709	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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