Variant report

Variant	rs2146940
Chromosome Location	chr14:63555491-63555492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10134176	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10136314	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10147103	0.93[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10162413	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10483763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1111365	0.91[ASN][1000 genomes]
rs1111450	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1111452	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11158471	0.87[MEX][hapmap]
rs11158472	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1950983	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs1956670	0.91[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap]
rs3861503	0.89[EUR][1000 genomes]
rs3915801	0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs4483779	0.95[CEU][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap]
rs4584750	0.96[CEU][hapmap]
rs4902201	0.96[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap]
rs6573480	0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7159344	0.89[JPT][hapmap]
rs8006668	0.87[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs8015817	0.91[CEU][hapmap]
rs8017368	0.96[CEU][hapmap]
rs8018618	0.89[EUR][1000 genomes]
rs8019140	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap]
rs941709	0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv564893	chr14:63526931-63796122	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1045599	chr14:63540073-63765152	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links