Variant report
| Variant | rs4902201 |
|---|---|
| Chromosome Location | chr14:63566635-63566636 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:63549531..63551037-chr14:63565219..63567811,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10132985 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs10134176 | 0.93[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap] |
| rs10136314 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap] |
| rs10147103 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs10162413 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10483763 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap] |
| rs1111365 | 0.91[ASN][1000 genomes] |
| rs1111450 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1111452 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11158472 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1950983 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap] |
| rs1956670 | 0.96[CEU][hapmap] |
| rs2146940 | 0.96[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap] |
| rs3861503 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3915801 | 1.00[CEU][hapmap] |
| rs4483779 | 1.00[CEU][hapmap] |
| rs4584750 | 1.00[CEU][hapmap] |
| rs6573480 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs8006668 | 0.94[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs8015817 | 0.96[CEU][hapmap] |
| rs8017368 | 1.00[CEU][hapmap] |
| rs8018618 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs8019140 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap] |
| rs941709 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527251 | chr14:63400786-64068806 | Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv520528 | chr14:63400786-64157117 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 3 | nsv564893 | chr14:63526931-63796122 | Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv1045599 | chr14:63540073-63765152 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
