Variant report

Variant	rs6573480
Chromosome Location	chr14:63544021-63544022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10132722	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10134176	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs10136314	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap]
rs10147103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10483763	0.93[CHB][hapmap];0.95[JPT][hapmap]
rs10873166	0.95[CEU][hapmap];0.83[YRI][hapmap]
rs1111365	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1111450	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[ASN][1000 genomes]
rs1111452	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11158471	0.95[CEU][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap]
rs11158472	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1950983	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.93[YRI][hapmap]
rs1950985	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs2146940	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2356101	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs3850312	0.94[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap]
rs3915801	0.94[ASW][hapmap];0.83[YRI][hapmap]
rs4127778	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs4127780	0.94[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4483779	0.80[JPT][hapmap]
rs4584750	0.83[YRI][hapmap]
rs4902201	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7141839	0.94[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs7159344	1.00[CEU][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8006668	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8017368	0.83[YRI][hapmap]
rs8019140	0.94[ASW][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.89[YRI][hapmap]
rs8020935	1.00[CEU][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv564893	chr14:63526931-63796122	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1045599	chr14:63540073-63765152	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63543200-63545800	Enhancers	Hela-S3	cervix

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