Variant report

Variant	rs1950985
Chromosome Location	chr14:63525080-63525081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10132722	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10134176	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs10136314	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs10147103	1.00[CEU][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10162413	0.90[ASN][1000 genomes]
rs10873166	0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs1111365	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11158471	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1950983	0.89[YRI][hapmap]
rs1956670	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2356101	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs3850312	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs3915801	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs4127778	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs4127780	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4584750	0.92[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs6573480	1.00[CEU][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7141839	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7159344	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8006668	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8015817	0.92[CHB][hapmap];0.96[YRI][hapmap]
rs8017368	0.91[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs8018618	0.98[ASN][1000 genomes]
rs8019140	0.85[YRI][hapmap]
rs8020935	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs941709	0.91[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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