Variant report
| Variant | rs7159344 |
|---|---|
| Chromosome Location | chr14:63515892-63515893 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10132722 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10132985 | 0.90[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10134176 | 1.00[CEU][hapmap];0.85[JPT][hapmap] |
| rs10136314 | 1.00[CEU][hapmap] |
| rs10147103 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10483763 | 0.85[JPT][hapmap] |
| rs10873166 | 0.95[CEU][hapmap];0.80[YRI][hapmap] |
| rs1111365 | 0.84[EUR][1000 genomes] |
| rs1111450 | 0.82[YRI][hapmap] |
| rs11158471 | 0.95[CEU][hapmap] |
| rs1950983 | 0.85[JPT][hapmap] |
| rs1950985 | 1.00[CEU][hapmap] |
| rs1950986 | 0.85[JPT][hapmap] |
| rs2146940 | 0.89[JPT][hapmap] |
| rs2356101 | 1.00[CEU][hapmap] |
| rs3850312 | 1.00[CEU][hapmap] |
| rs3861503 | 0.94[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4127778 | 1.00[CEU][hapmap] |
| rs4127780 | 1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4483779 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6573480 | 1.00[CEU][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7141839 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs8006668 | 1.00[CEU][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs8020935 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527251 | chr14:63400786-64068806 | Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv520528 | chr14:63400786-64157117 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:63513800-63517400 | Weak transcription | Hela-S3 | cervix |
