Variant report
Variant | rs3850726 |
---|---|
Chromosome Location | chr3:99911080-99911081 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000235156 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1017967 | 0.84[ASN][1000 genomes] |
rs35170554 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6776886 | 0.84[ASN][1000 genomes] |
rs6810262 | 0.84[ASN][1000 genomes] |
rs7623587 | 0.83[ASN][1000 genomes] |
rs7631174 | 0.84[ASN][1000 genomes] |
rs7632678 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7653276 | 0.85[ASN][1000 genomes] |
rs9290003 | 0.84[ASN][1000 genomes] |
rs9847283 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.85[ASN][1000 genomes] |
rs9850382 | 0.87[ASN][1000 genomes] |
rs9868170 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv817478 | chr3:99474086-99955548 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
2 | nsv916476 | chr3:99478229-100124625 | Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 46 gene(s) | inside rSNPs | diseases |