Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1017967	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16841874	0.80[CEU][hapmap];0.81[GIH][hapmap];0.81[TSI][hapmap]
rs2130369	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs2316263	0.89[ASW][hapmap];0.92[CEU][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35170554	0.83[ASN][1000 genomes]
rs3850726	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[ASN][1000 genomes]
rs6767441	0.82[TSI][hapmap]
rs6776886	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6798114	0.80[CEU][hapmap]
rs6810262	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7631174	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7632678	0.80[ASN][1000 genomes]
rs7653276	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9290003	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9814549	0.80[CEU][hapmap]
rs9837131	0.82[TSI][hapmap]
rs9847283	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9849977	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9850382	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9860514	0.84[ASN][1000 genomes]
rs9860561	0.84[ASN][1000 genomes]
rs9868170	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv523836	chr3:99906250-99906751	Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7623587	TMEM45A	cis	parietal	SCAN
rs7623587	C3orf26	cis	multi-tissue	Pritchard
rs7623587	C3orf26	Cis_1M	lymphoblastoid	RTeQTL
rs7623587	SENP7	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99899000-99907800	Weak transcription	Psoas Muscle	Psoas
2	chr3:99899000-99911000	Weak transcription	Aorta	Aorta
3	chr3:99905000-99906800	Weak transcription	Fetal Stomach	stomach
4	chr3:99905000-99907400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:99905000-99907800	Weak transcription	Left Ventricle	heart
6	chr3:99905400-99908600	Weak transcription	Placenta	Placenta
7	chr3:99905600-99906800	Weak transcription	HepG2	liver
8	chr3:99905600-99908000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:99905600-99910400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:99905600-99910400	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:99905800-99907800	Weak transcription	K562	blood
12	chr3:99905800-99910600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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