Variant report

Variant	rs9849977
Chromosome Location	chr3:99914797-99914798
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1017967	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2316263	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6776886	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6810262	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7620267	0.82[AMR][1000 genomes]
rs7623587	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7631174	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7653276	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9290003	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9847283	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9850382	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9860514	0.80[AMR][1000 genomes]
rs9860561	0.80[AMR][1000 genomes]
rs9868170	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9849977	C3orf26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99912600-99915800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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