Variant report

Variant	rs38508
Chromosome Location	chr7:28022897-28022898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1023520	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10248014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2106923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs38499	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs38501	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs38505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs38506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs38512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs38520	0.87[AMR][1000 genomes]
rs4722749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6462062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6955462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6974886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs957763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs957764	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs995367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28002800-28034600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:28006200-28024800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:28006400-28031800	Weak transcription	NHDF-Ad	bronchial
4	chr7:28012400-28028000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr7:28013400-28034200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:28015600-28032400	Weak transcription	Ovary	ovary
7	chr7:28017600-28042400	Weak transcription	Aorta	Aorta
8	chr7:28017800-28028000	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:28018000-28026200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:28020000-28032400	Weak transcription	Primary B cells from cord blood	blood
11	chr7:28022400-28026200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:28022400-28026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:28022400-28028000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:28022400-28031000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:28022400-28036200	Weak transcription	Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links