Variant report

Variant	rs957763
Chromosome Location	chr7:28001470-28001471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1023520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10248014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2106923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs38499	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs38501	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs38505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs38506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs38508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs38512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs38520	0.87[AMR][1000 genomes]
rs4722749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6462062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6955462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6974886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs957764	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs995367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1024819	chr7:27949955-28020969	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27942400-28005600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:27980400-28017200	Weak transcription	Aorta	Aorta
3	chr7:27988800-28002200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:27989600-28006800	Weak transcription	Right Ventricle	heart
5	chr7:27992000-28013400	Weak transcription	Left Ventricle	heart
6	chr7:27993000-28001800	Strong transcription	Primary B cells from cord blood	blood
7	chr7:27995400-28006000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:27997400-28004800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:27998400-28015000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:27999000-28005400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:27999600-28002600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:27999800-28002600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:28000000-28001600	Enhancers	Brain Anterior Caudate	brain
14	chr7:28000000-28001600	Enhancers	Brain Cingulate Gyrus	brain
15	chr7:28000000-28001600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr7:28000000-28002200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:28000000-28002600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:28000200-28002600	Enhancers	HSMMtube	muscle
19	chr7:28000200-28002800	Enhancers	Osteobl	bone
20	chr7:28000400-28002000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr7:28000400-28002000	Enhancers	HSMM	muscle
22	chr7:28000400-28002800	Enhancers	NHDF-Ad	bronchial
23	chr7:28000400-28005400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:28000400-28005400	Weak transcription	Brain Angular Gyrus	brain
25	chr7:28000600-28005000	Weak transcription	Colon Smooth Muscle	Colon
26	chr7:28000600-28006000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:28000600-28019400	Weak transcription	Pancreas	Pancrea
28	chr7:28000600-28021600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:28000800-28002200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:28001000-28001600	Enhancers	Fetal Muscle Leg	muscle
31	chr7:28001000-28002200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:28001000-28011200	Weak transcription	Brain Substantia Nigra	brain
33	chr7:28001000-28013400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:28001400-28001600	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr7:28001400-28005400	Weak transcription	Brain Hippocampus Middle	brain

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