Variant report

Variant	rs3851169
Chromosome Location	chr13:51263228-51263229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51230983..51233957-chr13:51261931..51264364,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34311141	0.86[ASN][1000 genomes]
rs706594	0.86[ASN][1000 genomes]
rs706595	0.86[ASN][1000 genomes]
rs797502	0.86[ASN][1000 genomes]
rs797510	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51251400-51265600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr13:51253400-51265000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:51254400-51267800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr13:51256200-51268400	Enhancers	Fetal Thymus	thymus
5	chr13:51256800-51263400	Enhancers	Dnd41	blood
6	chr13:51258800-51264600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr13:51258800-51265800	Weak transcription	Right Ventricle	heart
8	chr13:51259800-51264600	Weak transcription	Left Ventricle	heart
9	chr13:51259800-51266000	Weak transcription	Spleen	Spleen
10	chr13:51259800-51268400	Weak transcription	Small Intestine	intestine
11	chr13:51260000-51264600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr13:51260000-51267200	Weak transcription	Psoas Muscle	Psoas
13	chr13:51260200-51263400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:51260200-51264200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:51260200-51265400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:51260200-51265400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:51260200-51265800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr13:51260200-51265800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:51260200-51267200	Weak transcription	Right Atrium	heart
20	chr13:51260200-51268000	Weak transcription	HMEC	breast
21	chr13:51260400-51263800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr13:51260400-51263800	Weak transcription	HSMMtube	muscle
23	chr13:51260400-51264400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr13:51260400-51265000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr13:51260400-51265200	Weak transcription	HSMM	muscle
26	chr13:51260400-51265200	Weak transcription	Osteobl	bone
27	chr13:51260400-51265800	Weak transcription	NHDF-Ad	bronchial
28	chr13:51260600-51263800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr13:51260600-51265400	Weak transcription	Brain Angular Gyrus	brain
30	chr13:51260600-51265800	Weak transcription	Fetal Lung	lung
31	chr13:51260800-51265600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr13:51261000-51263800	Weak transcription	Fetal Heart	heart
33	chr13:51261000-51264200	Weak transcription	Fetal Muscle Leg	muscle
34	chr13:51261000-51264600	Weak transcription	Brain Germinal Matrix	brain
35	chr13:51261000-51264800	Weak transcription	HUVEC	blood vessel
36	chr13:51261000-51265600	Weak transcription	NH-A	brain
37	chr13:51261200-51267600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr13:51261800-51267200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr13:51262200-51265000	Weak transcription	Brain Anterior Caudate	brain
40	chr13:51262200-51265000	Weak transcription	Brain Hippocampus Middle	brain
41	chr13:51262200-51265400	Weak transcription	Primary T cells from cord blood	blood
42	chr13:51262200-51267200	Weak transcription	Brain Substantia Nigra	brain
43	chr13:51263000-51263400	Enhancers	Thymus	Thymus

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